Projects

Databases and network resources I've worked on.

published 2013

Multi-layered signalling pathway database with regulatory networks.

network biologydatabase

published 2012

The NRF2 protein interactome and regulome, with autoregulatory loops.

interactomeregulome

active

Web tool to find evolutionarily conserved proteins across multiple ortholog databases, with Gene Ontology extension and Venn analysis.

orthologyGObioinformatics

active · published

Interactive Venn diagram viewer and editor for 2–9 sets; set statistics, UpSet and network views. With Python (PyPI) and R (CRAN) packages.

VennUpSetD3

active

Gene-set enrichment analysis across multiple ontologies with a progressive empirical FDR; 27 model organisms, 22 ontology types. R package (CRAN).

RenrichmentCRAN

Subpages · Research